Database/datasource optimized for string matching? - php

Question

I want to store large amount (~thousands) of strings and be able to perform matches using wildcards.
For example, here is a sample content:
Folder1
Folder1/Folder2
Folder1/*
Folder1/Folder2/Folder3
Folder2/Folder*
*/Folder4
*/Fo*4
(each line has additionnal data too, like tags, but the matching is only against that key)
Here is an example of what I would like to match against the data:
Folder1
Folder1/Folder2/Folder3
Folder3
(* being a wildcard here, it can be a different character)
I naively considered storing it in a MySQL table and using % wildcards with the LIKE operator, but MySQL indexes will only work for characters on the left of the wildcard, and in my case it can be anywhere (i.e. %/Folder3).
So I'm looking for a fast solution, that could be used from PHP. And I am open: it can be a separate server, a PHP library using files with regex, ...

Answer 1

Have you considered using MySQL's regular expression engine? Try something like this:
SELECT *
FROM your_table
WHERE your_query_string REGEXP pattern_column
This will return rows with regex keys that your query string matches. I expect it will perform better than running a query to pull all of the data and doing the matching in PHP.
More info here: http://dev.mysql.com/doc/refman/5.1/en/regexp.html

Answer 2

You might want to use the multicore approach to solve that search in a fraction of the time, i would recommend for search and matching, using FPGA's but thats probably the hardest way to do it, consider THIS ARTICLE using CUDA, you can do that searches in 16x usual time, in multicore CPU Systems, you can use posix, or a cluster of computers to do the job (MPI for example), you can call Gearman service to run the searches using advanced algorithms.

Answer 3

Were it me, I'd store out the key field two times ... once forward and once reversed (see mysql's reverse function). you can then search the index with left(main_field) and left(reversed_field). it won't help you when you have a wildcard in the middle of the string AND the beginning (e.g. "*Folder1*Folder2), but it will when you have a wildcard at the beginning or the end.
e.g. if you want to search */Folder1 then search where left(reverse_field, 8) = '1redloF/';
for Folder1/*/FolderX search where left(reverse_field, 8) = 'XredloF/' and left(main_field, 8) = 'Folder1/'

Answer 4

If your strings represent some kind of hierarchical structure (as it looks like in your sample content), actually not "real" files, but you say you are open to alternative solutions - why not consider something like a file-based index?
Choose a new directory like myindex
Create an empty file for each entry using the string key as location & file name in myindex
Now you can find matches using glob - thanks to the hierarchical file structure a glob search should be much faster than searching up all your database entries.
If needed you can match the results to your MySQL data - thanks to your MySQL index on the key this action will be very fast.
But don't forget to update the myindex structure on INSERT, UPDATE or DELETE in your MySQL database.
This solution will only compete on a huge data-set (but not too huge as #Kyle mentioned) with a rather deep than wide hierarchical structure.
EDIT
Sorry this would only work if the wildcards are in your search terms not in the stored strings itself.

Answer 5

As the wildcards (*) are in your data and not in your queries I think you should start with breaking up your data into pieces. You should create an index-table having columns like:
dataGroup INT(11),
exactString varchar(100),
wildcardEnd varchar(100),
wildcardStart varchar(100),
If you have a value like "Folder1/Folder2" store it in "exactString" and assign the ID of the value in the main data table to "dataGroup" in the above index table.
If you have a value like "Folder1/*" store a value of "Folder1/" to "wildcardEnd" and again assign the id of the value in the main table to the "dataGroup" field in above Table.
You can then do a match within your query using:
indexTable.wildcardEnd = LEFT('Folder1/WhatAmILookingFor/Data', LENGTH(indexTable.wildcardEnd))
This will truncate the search string ('Folder1/WhatAmILookingFor/Data') to "Folder1/" and then match it against the wildcardEnd field. I assume mysql is clever enough not to do the truncate for every row but to start with the first character and match it against every row (using B-Tree indexes).
A value like "*/Folder4" will go into the field "wildcardStart" but reversed. To cite Missy Elliot: "Is it worth it, let me work it
I put my thing down, flip it and reverse it" (http://www.youtube.com/watch?v=Ke1MoSkanS4). So store a value of "4redloF/" in "wildcardStart". Then a WHERE like the following will match rows:
indexTable.wildcardStart = LEFT(REVERSE('Folder1/WhatAmILookingFor/Folder4'), LENGTH(indexTable.wildcardStart))
of course you could do the "REVERSE" already in your application logic.
Now about the tricky part. Something like "*/Fo*4" should get split up into two records:
# Record 1
dataGroup ==> id of "*/Fo*4" in data table
wildcardStart ==> oF/
wildcardEnd ==> /Fo
# Record 2
dataGroup ==> id of "*/Fo*4" in data table
wildcardStart ==> 4
Now if you match something you have to take care that every index-record of a dataGroup gets returned for a complete match and that no overlapping occurs. This could also get solved in SQL but is beyond this question.

Answer 6

Database isn't the right tool to do these kinds of searches. You can still use a database (any database and any structure) to store the strings, but you have to write the code to do all the searches in memory. Load all the strings from the database (a few thousand strings is really no biggy), cache them and run your search\match algorithm on them.
You probably have to code your algorithm yourself because the standard tools will be an overkill for what you are trying to achieve and there is no garantee that they will be able to achieve exactly what you need.
I would build a regex representation of your wildcard based strings and run those regexs on your input. Your probabaly will have to do some work until you get the regex right, but it will be the fastest way to go.

Answer 7

I suggest reading the keys and their associated payload into a binary tree representation ordered alphanumerically by key. If your keys are not terribly "clumped" then you can avoid the (slight additional) overhead building of a balanced tree. You also can avoid any tree maintenance code as, if I understand your problem correctly, the data will be changing frequently and it would be simplest to rebuild the tree rather than add/remove/update nodes in place. The overhead of reading into the tree is similar to performing an initial sort, and tree traversal to search for your value is straight-forward and much more efficient than just running a regex against a bunch of strings. You may even find while working it through that your wild cards in the tree will lead to some shortcuts to prune the search space. A quick search show lots of resources and PHP snippets to get you started.

Answer 8

If you run SELECT folder_col, count(*) FROM your_sample_table group by folder_col do you get duplicate folder_col values (ie count(*) greater than 1)?
If not, that means you can produce an SQL that would generate a valid sphinx index (see http://sphinxsearch.com/).

Answer 9

I wouldn't recommend to do text search on large collection of data in MySQL. You need a database to store the data but that would be it. For searching use a search engine like:
Solr (http://lucene.apache.org/solr/)
Elastic Search (http://www.elasticsearch.org/)
Sphinx (http://sphinxsearch.com/)
Those services will allow you doing all sort of funky text search (including Wildcards) in a blink of an eye ;-)